For example, iRefWeb (http://wodaklab.org/iRefWeb/), an interface to the interaction Reference Index (iRefIndex) database (Razick et al., 2008), uses a basic implementation of Cytoscape Web to display all interactions in which a single query gene participates.
In our database we incorporated jBrowse, which supports different file formats, and in our specific implementation we use FASTA files to display the reference sequence and BED, GFF, or BAM format files for displaying the list of genes and other discrete features such as operons [ 32].
Because of its flexible implementation, it can also be used to display other types of alignments, for example of a cluster of genes (each block representing one gene), to allow for the investigation of synteny.
Current implementation of GWMA requires the same SNPs to display consistent evidence of phenotypic association across multiple populations.
Matrices were additionally developed to display text coded as relevant for implementation.
In the first implementation of ZFNGenome, we used GBrowse version 1.67 with a BerkeleyDB back end to display all potential ZFN target sites found in Arabidopsis [ 15].
The forward motion gait was also discovered to display a drift, as shown in Fig. 16, which was compensated for in the implementation of the algorithm.
We know how to display video on the web but the patents and licensing fees surrounding some of those implementations are high.
If data structures or reporting formats change within an implementation of VistA then local programmers must also update patient data objects so that RPCs continue to retrieve appropriate data to display for healthcare workers.
They wanted to display force".
"To display this is reprehensible," Eaton said.
