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Availability and implementation: Source Code implementing the method is available at: http://research.ics.aalto.fi/mi/software/GFAsparse Contact: [email protected] or [email protected] Supplementary Information: Supplementary data are available at Bioinformatics online.
Availability and implementation: Source code is freely available at http://www-shimizu.ist.osaka-u.ac.jp/shimizu_lab/FastPros/, implemented in MATLAB and COBRA toolbox.
Availability and implementation: Source code and binaries freely available for download at http://www.cs.cmu.edu/∼ckingsf/software/pathenc/, implemented in Go and supported on Linux and Mac OS X. Contact: [email protected]
Availability and implementation: Source codes are available on request.
Availability and implementation: Source code is available at www.kostkalab.net/software.
Availability and implementation: Source codes are available at https://github.com/kasohn/hiHMM.
Availability and implementation: Source code is available at http://github.com/biolab/red.
Availability and implementation: Source code and binaries are freely available at https://github.com/rrwick/Bandage.
Availability and implementation: Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb.
Availability and implementation: Source code and executables are available at https://github.com/WaveCNV.
Availability and implementation: Source code is at https://github.com/marinkaz/fusenet.
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