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Furthermore, they evaluated their implementation on a desktop machine using a high-end GPU NVIDIA GeForce GTXX 660) and a CPU Intel Core i5-3570KK).
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The computation time required by the implementations on a desktop PC appears feasible, being maximally a few hours for MCMC and a few minutes for GEM.
Our MATLAB implementation was on a desktop machine that had an Intel 2.53 GHz Core 2 Duo processor with 3 GB of RAM.
A speed-up of more than 30 is achieved as compared to a multi-threaded OpenCV implementation on a 3.2 GHz desktop quad-core CPU.
The graphics-processor implementation, processing roughly 110 million scattering events per second, was found to run more than 70 times faster than a similar, single-threaded implementation on a 2.67 GHz desktop computer.
Our results show that parallel implementation achieves typical acceleration values in the order of 80 120 times compared to CPU using a single-threaded implementation on a 2.33 GHz desktop computer.
All modeling in this study was carried out on a desktop implementation of Maxent (URL:http://www.cs.princeton.edu/schapire/maxent/).edu/schapire/maxent/
All modeling in this study was carried out on a desktop implementation of GARP in a beta-testing stage (R. Scachetti-Pereira, unpub. data).
So the scheduling (with this software implementation) takes about 63% of a one image processing computation time on a desktop computer.
Availability and implementation: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL).
How fast is Algorithm 2? Figures 7 and 8 show that the Perl implementation runs on an old desktop PC at the speed of roughly 1000 basepairs per second.
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