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Availability: A C++ implementation of the inference tool is available under GNU GPL license (http://www.sanger.ac.uk/resources/software/optimist/).sanger.ac.uk/resources/software/optimist/
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For quantitative genotyping, we applied Cybergenetics TrueAllele® Casework implementation of the described inference model to these STR data.
Details of the conceptual framework and implementation of the conditional inference procedures can be found in (Hothorn et al. 2008).
Using a high-performance rewriting language implementation and a strategy language to guide rewriting computations, we can obtain in a modular way implementations of both the inference rules of automated deduction procedures and of algorithms controling their application.
In our implementation, the inference of sequence repeats is guided by the natural property of 21-mer abundances to occur at integer multiples of the modal k-mer abundance (the principal peaks in Figure 1).
In Section 4, we discuss the implementation of the particle filter based inference algorithm that incorporates the proposed target model for ATR tasks.
For both GLMs, multiple comparisons among food regimes were conducted with the 'multcomp package' in R (R Development Core Team, 2010) using general linear hypotheses testing as an implementation of the framework for simultaneous inference according to Hothorn et al. [ 56].
Although our primary hypothesis concerned precision-related responses in dopaminergic midbrain regions, the neurobiological implementation of active inference using variational Bayes also makes strong predictions about precision-related effects in other brain systems (see Friston et al. (2013)).
The first was that the mechanism of neuronal copying was a neuronal implementation of causal inference [86].
We demonstrate that it is practical to infer such an expressive TAL by showing a prototype implementation of type inference for code compiled by Bartok, an optimizing C# compiler.
This section describes an implementation of the query interpreter that performs inference in the logic language.
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