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Authors in [14] discuss GPU implementation of sequence alignment algorithms used in molecular biology.
Regrettably, current implementation of sequence search algorithms do not consciously differentiate between the 3D-structural (i.e., fold-critical) sequence segments and the non-globular (i.e., remnant) segments.
To add further complexity, current implementation of sequence search algorithms do not consciously differentiate between the 3D-structural sequence segments and the non-globular segments of the alignments.
Gorodkin's implementation of Sequence Logo specifically distinguishes nucleotides that occur more or less than random chance by inverting those characters that have a less than random chance of occurrence [ 7].
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As clinical implementation of sequencing data becomes widespread there is a need for a freely available analysis platform that can be shared between clinical laboratories.
SF contributed the idea of sequence-based signatures to this study, developed the concept and implementation of the sequence analyses and helped to draft the manuscript.
However, the concrete implementation of the sequence mining algorithm can be replaced with no impact in the prototype.
The implementation of MA sequence increases the number of measurement points and therefore the efficiency of the detection system and the final imaging resolution.
The implementation of spatial sequence disambiguation contained 18 states aliased to 11 observations.
A local Java implementation of the "sequence logo" algorithm [ 24] was used to generate a graphic representing the Cre recombinase binding site profile.
The alternative solution, which we have also pursued [ 6] is to identify a Boolean implementation of Universal Sequence Maps, designated as bUSM, which removes the source of distance overestimation at each of the of the scales accommodated by the numerical resolution of the computing environment being used.
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