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Implementation of annotations that recently became available through ENCODE showed enrichment of tDMRs in DNase hypersensitive sites and transcription factor binding sites.
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ORW was involved in database design and the design and implementation of the annotation computational pipeline.
In this implementation, the merging of annotations with documents takes place within the client.
The novelty here presented is the implementation of the NumtS annotations in the UCSC Genome Browser.
This paper presents the motivation for and system design and implementation of a context annotation process in Kepler/Ptolemy.
The present work deals with the implementation of a fast annotation system which is able to cluster GO terms on the basis of their semantic similarity and their calculated weights.
In order to better identify the causative variations for genetic disorders and characterize them, the implementation of efficient variant annotation tools emerges and is one of the most challenging aspects of the field.
All of the EuCAP components are open-source, thereby allowing the implementation of EuCAP for the annotation of other genomes.
To identify significantly enriched biological functions among the targets and intermediators, gene set enrichment analysis was performed using local implementation of the Database for Annotation, Visualization and Integrated Discovery, v6.7 (DAVID; http://david.abcc.ncifcrf.gov/).abcc.ncifcrf.gov/
We found that the implementation of our clinical omics annotation pipeline into a semantic workflow helped us to achieve the requirements for enhanced transparency, reproducibility, and analytical accuracy recommended for translational and clinical omics.
In this article, we present an implementation of an automated chemical name annotation system based on the MeSH controlled vocabulary called MeSH Automated Annotations (MAA).
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