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To this end, we chose an audio feature called "spectral compactness", with an implementation available from the jAudio feature extraction library [81].
For SVM algorithm, the LIBSVM implementation available from http://www.csie.ntu.edu.tw/~cjlin/libsvm/ was utilized, which was originally developed by Chang and Lin [ 28].
Regarding SVM, LIBSVM implementation available from http://www.csie.ntu.edu.tw/~cjlin/libsvm/index.html was utilized, which was originally developed by Chang et al. [ 33].
Tropism was also predicted using the 11/25 [ 39] and 11/24/25 [ 40] rules (software implementation available from the corresponding author on request).
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Full reference MATLAB implementation available.
An implementation is available from: http://www.trex.uqam.ca.uqam.ca
An implementation is available from: http://darwin.uvigo.es/software/tcs.html.html
Our implementation is available from http://www.csse.monash.edu.au/~karun/pmml/.edu.au/~karun/pmml/
The new implementation is available from version 8.00 and higher of T-Coffee.
Availability: Matlab implementation is available from http://www.cs.cmu.edu/~thlin/tram/ Contact: [email protected] Several methods have been developed for classifying tissues using gene-expression data.
The implementation is available from additional file 1 and additional file 2. Our automated annotation pipeline [ 24] was used to analyse the sequences at the CDs.
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