Sentence examples for implement blast from inspiring English sources

TZ assisted in writing the python code to implement Blast and PAML.

In the ChiloDB system, we used the wwwblast program version 2.2.26 (28) to implement BLAST sequence similarity searches against the SSB genome and transcriptome sequences because it provides a GUI through the web forms.

In addition to SPMap, in this work, we have devised and implemented BLAST k-nearest neighbor (BLAST-kNN) and peptide statistics combined with SVMs (PEPSTATS-SVM).

We implemented BLAST algorithms in SjTPdb.

PhyloGenie serves as an automated pipeline in which the following analyses can be implemented: BLAST search against a local database, extraction of homologous sequences from the BLAST results, generation of alignments, phylogenetic tree reconstruction, and calculation of bootstrap support values for individual phylogenies.

This is in support of the experimental set-up as one of the major Fusarium head blight resistance QTLs (Fhb1) that segregates between resistant and susceptible lines and is located on the short arm of chromosome 3B [ 35]. chromoWIZ can be used to detect homologous genes and their locations in the four cereal and model genomes using the implemented BLAST searches.

The Phytozome BLAST search implements NCBI Blast (v2.2.13).

Currently, two services are implemented: NCBI Blast through the Blast URLAPI (previously known as QBlast) and the HMMER web service at hmmer.janelia.org (Finn et al., 2011).

The SASMs that we computed were implemented in BLAST and PSI-BLAST, and their effectiveness in detecting remote homologs was compared against BLOSUM62.

Specifically, we implement V-BLAST MIMO signal processing technique in concert with OFDM because of its ability to cope with severe channel conditions such as frequency-selective fading due to multipath.

We performed a reciprocal best-hit BLAST (BLASTN) using an e-value threshold of 1 × 10− implemented in BLAST + version 2.2.28 (Camacho et al. 2009).