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The pipelines used to implement analyses must therefore scale with respect to the resources on a single compute node, the number of nodes on a cluster, and also to cost-performance.
WinBUGS [ 9] allows to implement analyses for interval censored data with frailty in the same model.
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We would like to thank Dr. Guy Hawkins for guidance and R code for fitting Urgency Gating and Drift Diffusion Models and Prof. Jeffrey Erlich for assistance and code for implementing analyses examining correlations between RT and FRs53 (code available at https://github.com/erlichlab/elutils).
RRG and JP implemented analyses.
We implemented analyses with up to 10 neighbouring genes/query and confidence scores > 0.9.
However, to address the bias and incompleteness of such a hypothesis-driven approach, we also implemented analyses involving large-scale data-driven queries.
- Surveillance design: Describes activities and methods used for implementing, analysing and communicating surveillance system components, e.g. populations, sampling, diagnostics, case definition, and statistics.
While the three main neuroimaging software packages, SPM (RRID SCR_007037 17,18, FSL (RRID SCR_002823)19,20 and AFNI (RRID SCR_005927 21,22, all implement similar analyses, they often use different terms to refer to the same concept.
We used MrBayes 3.1.2 [ 55] to implement BI analyses.
Additional file 5 provides the R code used to implement these analyses.
We used Mathematica®; (version 10, Wolfram Research) to implement and analyse the model, with a standard laptop (or desktop) computer.
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