This is unsurprising because, to the authors' knowledge, AdapterRemoval is the only other tool to implement a pair-aware adapter removal strategy.
Either element of a pair can itself be a pair, a property that holds true for either method of implementing a pair that we have seen: as a tuple or as a dispatch function.
The new guidelines, intended as a road map toward implementing a pair of executive actions Trump signed last month, call for the hiring of thousands of additional enforcement agents, expanding the pool of immigrants who are prioritized for removal, speeding up deportation hearings and enlisting local law enforcement to help make arrests.
The conventional maximum likelihood carrier recovery approaches[26 28], as shown in Figure 4, requires implementing a pair of band-edge (BE) filters that operate in parallel with the SRRC filter.
We implemented a pair HMM with 10 non-silent states match/mistmatch state in V gene, insertion in V gene (Iv), deletion in V gene (Dv), V D junction n nucleotides, match/mismatch in DH gene, insertion in the DH gene (Id), deletion in the DH gene (Dd), D J junction n nucleotides, match/mismatch in the J gene, insertion in the J gene (Ij) and deletion in the J gene (Dj).
We implemented a paired climbed-unclimbed design that successfully removed potentially confounding environmental variation.
To quantify changes with gestational age, we used linear models in which the response variable was the expression of each gene, while independent variables included the gestational age as a binary variable (term vs preterm gestation) as well as a subject-specific fixed effect, hence implementing a paired (within subject) analysis.
Another example, MorphMS, implemented a pair-HMM statistical alignment between two species [42].
We used a previously developed active-learning exercise in which students assign playing cards randomly into two groups (Enders et al., 2006) and extended this exercise to have students physically implement a matched-pair design using playing cards.
To check if the observed differences can be expected as a general outcome when comparing deterministic and stochastic methods for this problem, we implement an additional pair of methods.
