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Images acquired from the Genome Analyzer were processed through the bundled image extraction pipeline (Illumina).
Sequences obtained from the Illumina/Solexa sequencer were processed through the bundled Solexa image extraction pipeline as previously described (Trompouki et al., 2011).
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OTB's mission statement is to provide a free software end-to-end solution for the Earth Observation image information extraction pipeline based on a generic, high performance C++ library.
This basic algorithm in the feature extraction pipeline for SFX image data from LCLS requires ~10 s/image single-threaded on a Xeon processor.
Events and entities are identified using an information extraction pipeline and labeled according to types defined in an ontology.
However, the NE tagger may benefit with the feedback from subsequent stages in a information extraction pipeline, such as semantic Relation Extraction [59].
The DArTsoft marker extraction pipeline produced large numbers of markers in each of the three populations.
The information extraction pipeline implemented in the tool is based on Apache UIMA [ 38].
In addition to PCR and extraction controls, we processed nine extraction blank controls to test directly for modern DNA contamination along the DNA extraction pipeline.
In this article, we present SPEX (SPatial gene EXpression pattern EXtractor), a highly effective and reliable image processing pipeline for automated and concise extraction of bona fide gene expression patterns (rather than generic shaded areas as usually recognized by naive pattern extracting procedures), from Drosophila embryonic ISH results imaged from the lateral view.
First, red-eye candidates are extracted from the input image by using an image filtering pipeline.
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