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A domain was considered present if HMM e-value < 10 and HMM score > 5.
But, because of the profusion of clichés that have come before, and the fact that he's talking about the ocean here, the viewer doesn't know if, hmm, the actual tide was beginning to turn, thereby prompting spawning, or if that was merely an exhausted metaphor meant to indicate that the spawning situation was starting to look more favorable.
The approach also shows the limits of current annotation schemes: If HMM searches had been the only approach used, this would have resulted in many false positives and false negative PKS I being identified.
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If the HMMs were perfect models of the families, then we would only need to compare the seeds to other unassigned regions, but in practice, we need to compare the seeds to members of known families as well.
If multiple HMMs or datasets are used, Krona charts for each can be accessed quickly through a dropdown list for comparison.
Hmm, if you get over 200k we'll ask the Captain if you can join our expedition to the Antarctic and dance with the penguins.
Hmm, if only there was a system that had six USB ports – oh yeah, the PS3 has plenty.
A polyphone is modelled by its own HMM if it can be observed at least 50 times in the training set.
In the analysis, the minimum WER did not necessarily occur when the SNR of the noisy test speech matched the training speech (i.e., if a match HMM were selected, the red minimum plots would all lie along the green diagonal of the input test speech SNR versus selected HMM SNR model).
Hmm, if only there were an online tool for translating.
Hmm, if you haven't thought about that, it's time to start.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com