If I indicates that all three of u, v and w share a haplotype then the haplotype v shares with u is the haplotype u shares with w, if not u shares with v the haplotype it does not share with w.
Then, for each call to cell_fires, which corresponds to a time increment of 20 ms, cell j is checked to see if the time i indicates that it is time to fire.
The alignment encoding of r i is given by a 5-tuple a i = 〈 id(r i ), | r i |, d i, I i, g 〉, where d i is the start position of r i on C, I i indicates if r i belongs to the forward (I i = 1) or reverse complementary (I i = 0) strand of C, and g specifies insertions in r i.
A gene is represented by a vector of variables for each network, where component i indicates if the corresponding protein interacts with protein i with respect to that particular network.
For a given type of functional association data we combined edges from the two databases by taking the union of interactions from BioGRID and STRING and represented each gene by a vector of variables, where component i indicates if the corresponding protein interacts with protein i in the combined network.
We combined edges from the two databases by taking the union of interactions from BioGRID and STRING and represented each gene by a vector of variables, where component i indicates if the corresponding protein interacts with protein i in the combined network.
We represent this phenotype as a binary vector of length 124 whose entry at position i indicates viability if sulfur source i is the sole sulfur source.
40 If the I statistic indicated considerable heterogeneity (Cochrane Handbook, section 9.5.2, http://handbook.cochrane.org/), we combined the summary measures across the studies using a random effects model that assumed that the included studies represent a sample from a larger population of studies.
An electrocardiogram and abdominal computed tomography scan were performed in all patients at baseline, with further imaging if clinically indicated (i.e. bone scan, head computed tomography).
CRT was indicated if (i) the mesorectal fascia (MRF) was threatened (macroscopic tumour located within 2 mm of the MRF on the MRI), (ii) the MRF was involved (up to or beyond the MRF on the MRI), or (iii) there was T3 or T4 tumour with distal extent within 5 cm of the anal verge.
