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However, if we assume a 100%% identity cluster definition, no 100%% identity cluster was found, which suggests that no cases of MDR-TB transmission occurred in Minas Gerais State.
The blood cancers still cluster together under the normalization, but two acute blood cancers, more aggressive and therefore more unstable with respect to a unique genetic identity, cluster with two other cancers that have high mutation rates, lung cancer and ovarian carcinoma.
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Hunting and fishing opportunities were especially important in village commons, whereas social interactions, gathering, and cultural identity clustered near settlements on private lands.
Habitat and stand identity (clustering of sites within stands) explained 55.5% of the total variation; 16.3% was unique to habitat alone (29.4% of the total variance explained — TVE) and 17.2% (31.0% TVE) was shared with stand identity.
However a distinct shoulder forms around the 90 95% sequence identity clustering level, therefore we identified the 90% sequence identity threshold as the lower limit of sequence identity that produces clusters of highly homologous proteins (Fig. 3a b).
These 60% sequence identity clusters (also called s60 clusters) are useful to quantify diversity in superfamilies.
This superfamily is extremely large with 402 60% sequence identity clusters.
In CATH, all 60% sequence identity clusters have a pre-defined representative.
This is a very large and diverse superfamily with 127 60% sequence identity clusters, but it has a limited coverage of protein protein interfaces (37% of representative residues).
The constraints to produce these plots are rather strict as we considered only superfamilies with at least 1060%% sequence identity clusters with functional site data.
The effect on EPTR and ROTR at each intervention group was modeled using generalized linear models (GLM) for binomial data (link function identity), clustered by site.
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