In order to identify nodes and attributes within the XML representations of biological models, SED-ML uses XPath, a language for finding information in an XML document [ 8].
Network centralities allow us to identify nodes (and the consequent biological processes) that have a relevant position in the overall network architecture [ 41].
In addition to measuring how modular the network is, determining to what extent modules are connected, and to identify nodes and edges responsible for connecting modules, is thus valuable information.
ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks.
Furthermore, we treat 'already mapped' neighbors in the same way as identified nodes (URIs and literals).
Moreover, the important questions of optimal chemotherapy in high-risk node-negative patients and of identifying node-negative patients benefitting from adjuvant taxane-containing therapy are addressed.
There is an IP address (size differs: 32 bit and 128 bit) to identify nodes (network interfaces) and a TCP/UDP port number to identify services on the node.
Overall, the RADICAL support values clearly identify nodes 3, 7, and 10 as problematic (fig. 3) and provide greater sensitivity for assessing relative branch support than do bootstraps or summation of gene tree occurrences.
13 These process-step models are useful insofar as they simplify and clarify a complex process and identify nodes where errors can occur.
