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While our method of classifying nodes into one of the four structural roles was used to highlight only a handful of key concepts, the classification may easily be broadened to identify lists of top concepts (e.g., top ten) within each of the roles.
For example, the Gene Set Enrichment Analysis (GSEA) proposed by Subramanian et al. [9] and subsequent versions of this technique [13], enable researchers to identify lists of genes that can be used to distinguish between control and case samples based on the expression levels that these genes show in previously-annotated sets of interrelated genes, i.e. canonical pathways.
These approaches identify lists of genes that are assigned to biological processes and functions via the gene ontology language.
To identify lists of shared and genome-specific genes at different levels of evolutionary divergence, we compared the gene content of S. melliferum IPMB4A with other representative Mollicutes genomes.
We identify lists of elements which have been accelerated in these branches, and in addition we report a follow up resequencing study on one of the elements we identified.
An alternative approach to assess whether mean-centering improves comparisons across published datasets was to identify lists of the five hundred most highly differentially expressed probesets across each dataset (those with the highest variance) and compare these gene lists with the most differentially expressed probesets from other single or combined datasets.
Similar(54)
LOW LEVEL COMPREHENSION- define, recall, describe, identify, list, match and recite, explain, summarize, interpret, rewrite, estimate, confer, translate, paraphrase.
Numerous gene expression studies have identified lists of genes with significantly altered expression, but disappointingly there is little consensus between studies [1].
Based upon the identified lists of age-related genes for both brain and lymphocyte samples, we also explored for differences in basic genomic architecture.
Within each Local Authority, a local coordinator identified lists of licensed premises.
Moreover, FunPat shows the best reproducibility of the identified lists of DE genes with respect to the other methods.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com