Exact(1)
This program identifies copies of TEs by comparing genome sequences with sequences present in a previously described library of TEs (RepBase 16.12: http://www.girinst.org/repbase/update/index.html) [ 55].
Similar(7)
CLImAT accurately identifies copy number alteration and loss of heterozygosity even for highly impure tumor samples with aneuploidy.
GISTIC identifies copy number alterations based on the frequency as well as the log relative ratio (LRR) signals to compute the q value (false discovery rate).
No existing work can be certainly attributed to him, and, although his influence must have been widespread, attempts to identify copies of his works remain conjectural.
First three columns – genome coordinates of the identified copies.
PCR products were directly sequenced followed by cloning to identify copies involved in transcription.
Using this analysis, we identified copies with two TIRs, the 5' and 3' parts of a related P element, and an internal sequence not similar to any P.
The close examination of identified copies showed that they have in average 91.7% nucleotide identity with the original SM-Tcn1 sequence.
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