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KO identifiers were assigned to 35-55% of the complete and partial CDSs identified in the metagenomic sequences from the 13 individuals using the KAAS system and 31-39% of KO assigned CDSs were then mapped to the KEGG functional modules (Additional file 1: Table S7).
*Unique identifiers were assigned to all participants.
Specific identifiers were assigned to enzymes, reactions and metabolites.
During the transcription processes, unique identifiers were assigned to the participants to ensure their anonymity.
Stable Identifiers were assigned to each gene, transcript, exon and translation.
AGI identifiers were assigned to probesets using data from the 2008-5-29 AfileATH1_array_elements file.
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Systematic identifiers are assigned to protein-coding genes (ORFs), RNA-coding genes (snoRNA, snRNA, rRNA, tRNAs, and microRNAs), and pseudogenes.
Primary identifiers are assigned to variations.
Most of the remaining Mt4.0 identifiers are assigned to genes previously present on BACs or Illumina WGS contigs.
Inconsistency of annotation systems for newly discovered proteins at the different protein-sequence databases often results in different identifiers being assigned to the same protein [ 23].
A set of candidate Entrez Gene identifiers is assigned to each gene mention in this step as well, comprising all potential matches based on the gene's name alone.
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