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The identifiers of human, mouse and zebrafish UCP2 genomic sequence obtained are [GenBank: NC_000011.8, NT_039433, NC_007116.1], respectively.
The data collection process consists of first retrieving identifiers of human orthologs for mouse and fly genes and then retrieving all required annotations for all gene identifiers present in the 'Gene' table.
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Users can search using UniProt identifiers of any human, mouse or rat protein.
The IPI identifiers of the human data were converted to their UniProt IDs [ 31, 32], and only the first UniProt match was retained along with its modification site information.
Annotations of the Affymetrix identifiers to human gene symbols are based on Hintermair [ 35] supplemented with additional information obtained from the NetAffx annotation provided by Affymetrix.
Specifically, we retrieved Ensembl identifiers of orthologs to human genes together with identifiers of their translated protein products.
Additional pathways were identified using the David Bioinformatics Database http://david.abcc.ncifcrf.gov/[ 73] through a gene set search using the ensembl gene identifiers for the set of human orthologs of the feline sequences we identified.
Specifically, we have examined the effects of aged muscle and systemic niches on key molecular identifiers of regenerative potential of human embryonic stem cells (hESCs) and post-natal muscle stem cells (satellite cells).
These results allow the distinct possibility of employing the ribosomal protein S12 gene as an early molecular diagnostic identifier for the screening of human cervical cancer and a potential target employed for cancer gene therapy trials.
The HUGO (http://www.genenames.org/) symbol for genes provides a unique identifier for human genes and is ideal for the integration of text mining derived knowledge.
With the confidence scoring scheme disabled, SciMiner identified 1114 human gene identifiers of which 677 matched the gold standard set.
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