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In order to link gene identifiers to the corresponding gene symbols/gene names, it is possible to import in TRAM any text data file containing essential description (e.g., probe identifiers list and matching gene symbols or GenBank sequence accession numbers) for each experimental platform used to assess gene expression level in the examined samples.
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Counts indicate the total number of instances of the mechanism based on protein identifiers listed in Additional file 10.
It should be stressed that not all the identifiers listed in Table 3 may relate to peptidases.
A Limited Data Set can include dates and geographic information, but not street addresses or other direct identifiers listed above.
More genomes from bacteria have been sequenced than for any other kingdom of organisms; thus, it is no surprise that most of the identifiers listed in Table 3 are from bacteria.
However, there is no immediate way to match the respective sequence identifiers listed by either RefSeq or Genome Reviews for the same gene of the same reannotated genome, although the knowledgebase UniProt [ 11] began to add links to both genome databases as this paper was in preparation.
Rather than proposing specific taxonomic revisions for the present study whose focus is outside of these specific systematic issues, we will maintain the historical Panagraimus identifiers listed in Table 1 and refer to clades PI and PII to distinguish between different Panagrolaimus subgroups.
Selection of a query term, for example Hazard, extends the chemical identifier list with a pre-generated MeSH query associated with the term of interest.
The PubChem Download facility [1] (http://pubchem.ncbi.nlm.nih.gov/pc_fetch) allows one to download PubChem records resulting from a search or a user-provided identifier list.
When any model registers itself with the system, the PID file for that model is compared with other existing PID files and the Unique Identifier list.
Currently, PID file creation and the Unique Identifier list maintenance and update is done manually; however, an automated process is under development to enable automatic comparison across models of species and reactions.
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CEO of Professional Science Editing for Scientists @ prosciediting.com