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Datasets containing gene identifiers and corresponding expression values were uploaded in the applications.
A data set containing protein identifiers and corresponding expression values was uploaded into in the application Ingenuity Pathways Knowledge Base.
A differentially expressed gene list containing gene identifiers and corresponding fold changes was uploaded as an Excel spreadsheet into the software.
The data set containing gene identifiers and corresponding expression values for 1663 high-fat responsive genes was uploaded into the application.
Briefly, the dataset containing gene identifiers and corresponding fold changes was uploaded into the web-delivered application and each gene identifier was mapped to its corresponding gene object.
The genes considered to have been differentially regulated to a significant extent were uploaded into IPA along with the gene identifiers and corresponding fold change values.
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The data set containing gene identifier and corresponding expression value was uploaded into in the application.
The miRNA identifier and corresponding pre-mir substructure for each variant were obtained by matching variant location with pre-mir coordinates retrieved from miRBase [ 32]. miRNA variant analysis was performed by custom R [ 33] scripts.
Also, we searched for the residual filled reactions by their enzyme name or EC number in the Pfam database to get the corresponding Pfam identifiers, and the corresponding genes were searched in IMG file.
UG identifiers and their corresponding signals were grouped into their corresponding GO terms, and analyzed using continuous and discrete GO analysis using KS and Fisher exact test, respectively, as compared with the global array population.
The consistency between systematic chemical identifiers and their corresponding MOL representation varies greatly between data sources (37.2%-98.5%).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com