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Unfortunately, for 34% (HumanCyc) to 42% (BiGG) of the metabolites included in the pathway databases, except for KEGG, this identifier is missing.
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A total of 64 (5.7%) CA genes, with no corresponding locus identifiers, were "missed" by our annotation pipeline and were added to our set of models (see an example in Figure 4).
According to one driver we asked about a switch from the stache to the Amp, the hot pink glow-in-the-dark identifier would be missed but he thought the color-coded LED display made a lot more sense.
For instance, multiplex identifier, target gene, target subfragment are missing from the representations from OBI.
When death information was missing, patient identifiers were submitted to the New York City Vital Records and Registry for a death certificate search, which was accomplished by searching by name and International Classification of Diseases (ICD) code.
If genes assigned to KO identifiers in 2 of those components are missing in plants, the module completion ratio is calculated as 85.7%and83.3%3% in the case of cyanobacteria.
They also contained the majority of HIPAA specified identifiers that were missed, 12 of 19 (63%).
The 19 HIPAA-specified identifiers that were missed by Beckwith's system were mainly consult accession numbers and misspelled names.
The remaining types of identifiers that were missed by our deidentification software were the names of health care organizations (hospitals, pathology departments, etc)., partial addresses of such institutions and a single name of a physician involved in the patient's care.
However, it is more usual in complex datasets that some values are missing, and that unique identifiers are not present for all, if any, records.
Where the free-text surgical procedure was missing, the operation was identified from OPCS coding obtained retrospectively using patient identifiers provided during the initial study.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com