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In addition, the linkage disequilibria (LD) structure of the identified contiguous SNPs was examined using the HAPLOVIEW software [33].
We identified contiguous regions where the read depth exceeded thresholds corresponding to the top 0.1, 0.01, and 0.001% of the per-base read depths, merging regions which fall within 50 bases of each other.
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In the first instance, the proximal data is numerically clustered using a fuzzy k-means (FKM) clustering algorithm, to identify contiguous classes.
Recently, the term Internet Bad Neighborhoods was created to identify contiguous ranges of IP address space that contain a significant number of machines with unwanted behavior [5].
We combined SAR and Landsat-derived optical (passive optical) image data to identify contiguous areas (> 0.5 ha) that are relatively homogenous in remote sensing metrics (forest patches).
The UER index was applied to ten historic centres in Portugal to compare energy savings potential, localize priority areas of intervention and identify contiguous areas with similar potential.
We then used this output to identify contiguous regions aligning to TEs at two levels, 50% identity and 80% identity.
Raw reads were also assembled to WOVitA1 and its flanking regions to identify contiguous segments of WOVitB sequence.
Thresholds for smoothed log ratios were then determined for gain/loss (±0.1) and amplification/deletion (±0.45) to identify contiguous copy number aberrations containing at least 15 consecutive probes.
A segmentation algorithm is applied to the normalized read counts to identify contiguous windows that make up a genomic region with a unique copy-number value.
This is especially designed to prevent potential "set effects" in which students identify contiguous items as items measuring similar attributes (Bong 1997).
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