Sentence examples for identified by the alignment from inspiring English sources

Nucleotide sequences overlapping the exon-intron boundaries were identified by the alignment of the spliced OR sequences with their cognate contig sequences.

Previous studies reported that local assembly allows to call INDELs much larger than those that can be identified by the alignment [ 13, 40, 54].

Traditionally, NATs were identified by the alignment of full-length cDNAs or expressed sequence tags to genome sequences, but an alternative method for large-scale detection of sense-antisense transcript pairs involves the use of microarrays.

The corresponding genomic regions of two major unique QTLs (uq.A09- 1 and uq.A09- 3) were identified by the alignment between the primer sequences of tightly linked SSR markers (BrSF6-2562 and BrSF0358) and the genomic sequences of B. napus (unpublished data) and B. rapa[ 34] due to the macro-colinearity between the A genomes of B. rapa and B. napus[ 35].

AntiSMASH's definition of the CAC included all 14 of the genes identified by the alignment-based search method described above (Additional file 5), plus two additional genes, one on either flank (coordinates in Additional file 3).

Finally, 31/260 predictions corresponded to ones identified by the 'galign' alignment tool to contain one mutant and zero wild-type reads, and could correspond to true lesions.

First, SNPs between S288C and RM11-1a were initially identified by the global alignment tool MUMMER [ 31].

First, repetitive sequences as identified by the UCSC Genome Browser alignment pipeline were not considered.

We define coverage as the fraction of the eggNOG orthologous groups shared by the two species and correctly identified by the network alignment.

The aa sequences of protease domains containing an intact catalytic triad as identified by the sequence alignment were phylogenetically analyzed using the maximum likelihood (ML) method.

Finally, a supervised search of "+" intergenic regions is performed, so as to insure that all copies of the motif identified by the pairwise alignment are detected.