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Unique tiger salamander haplotypes were identified by manually examining alignments using SeqManPro version 8.0.2.
Some problems can be identified by manually running the VLRE Compliance Checker program from the command line and examining the program output.
The SF events were identified by manually identifying ionograms showing SF and tabulating them according to type for further statistical analysis.
In these studies, two additional studies were identified by manually searching the references in the manuscripts.
Their citizenship of human gut bacteria were identified by manually checking their corresponding dossiers in Genome Project Database.
Additional publications were identified by manually searching the reference lists of included articles.
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The following twenty-eight steric-zipper structures present in the PDB were identified by searching manually the database using the literature information: 1yjo, 1yjp, 2okz, 2ol9, 2olx, 2on9, 2onv, 2onw, 2onx, 3dg1, 3dgj, 3fod, 3fpo, 3fqp, 3ftk, 3ftl, 3ftr, 3fva, 3hyd, 3nhc, 3loz, 3nvh, 3nvg, 3nvf, 3nve, 3ow9, 3q2x, and 3pzz.
New putative ncRNAs (i.e., ncRNAs not previously reported or previously identified by Rfam) were manually identified using the genome browser Artemis [ 69].
We identified no subunits characteristic of INO80 or SWI/SNF among the proteins copurified with AtSWC4, which additionally confirms the specificity of the detected interactions.> -wrap-foot> Proteins copurified with AtARP4 or AtSWC4, fused to Strep-tag, were identified by MS/MS and manually annotated on the basis of sequence- and domain architecture-similarity to yeast and human proteins.
For each patch, the figure shows the brushstrokes identified by art experts by manually marking, i.e., tracing, their irregular boundaries (first column), as well as the results obtained with the algorithm in [9] (second column) and the proposed one (third column).
Classification accuracy was computed within the ROIs manually identified by the expert OCT reader to avoid bias, by comparing the ground-truth pixels (manual analysis) to the automated algorithm results.
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