Exact(4)
Moreover, a control CLASH experiment performed with mixed human and yeast lysates indicated that the large majority (>98%) of the miRNA-target RNAs interactions identified by CLASH had formed in vivo in human cells.
Cognate miRNA-mRNA pairs identified by CLASH and represented in the miRNA depletion data set were retrospectively analyzed and compared to confirmed miRNA-mRNA pairs from miRTarBase (Hsu et al., 2011).
To quantify the conservation of putative miRNA-target interactions identified by CLASH, we analyzed PhyloP conservation scores (Pollard et al., 2010) within targets mapped to 3′ UTRs of annotated mRNAs from 46 vertebrate genomes.
We next probed the functionality of non-canonical interactions identified by CLASH (crosslinking, ligation, and sequencing of hybrids), a high-throughput technique that generates miRNA mRNA chimeras, which each identify a miRNA and the mRNA region that it binds (Helwak et al., 2013).
Similar(56)
Few unreasonable atom clashes were identified by the Molprobity module, and our DNAJA1-JD NMR structure has a very good Z-score (−1.59) compared to the average Z-score for NMR structures in the PDB (−10.74).
In that time, 46 Palestinians were killed by Israeli fire, including 25 identified by Israel as attackers, and the rest in clashes with Israeli troops.
At least 27 Palestinians have been killed by Israeli fire, including 11 identified by Israel as attackers and the rest in clashes between stone-throwers and Israeli troops.
On the Palestinian side, 47 people have been killed, 26 of them identified by Israel as attackers, the others killed in clashes with Israeli forces.
And 30 Palestinians -- 13 of them identified by Israel as attackers and the rest involved in stone-throwing clashes –- were killed, according to the Associated Press.
Travel agent Oleg Arkhipenkov was identified by one of the policemen as a person "who attempted to hit him" during the clashes.
This decoy is therefore clearly energetically discriminated from more realistic conformations, but it was identified by the algorithm, since the backrub allowed the side-chain to displace itself laterally to mostly escape a steric clash on one side.
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