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Each unique allelic pattern over all loci was identified as a sequence type (ST).
The BTB domain is a protein-protein interaction motif that was first identified as a sequence motif in genes of DNA virus [ 16].
A non-peptidase homologue was identified as a sequence having one or more active site residues replaced with an amino acid not known to occupy this position in an active peptidase.
Historically SVAs were originally identified as a sequence derived from part of the env gene and a 3′LTR from the HERV-K10 endogenous retrovirus with a poly A-tail and a GC-rich tandem repeat directly upstream and were named SINE-R elements [ 1].
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We also identified an inflated frequency of SNPs at the G base of the canonical AG acceptor site which has been previously identified as a sequencing artifact [ 48].
Among many sequences identified as A-rich sequences, AAUAAA is the most well-conserved sequence in both yeast and plants.
This sequence was identified as a search sequence for LOGOs.
The E-value of this pattern calculated with MEME software (4.1 x 10-46) wasignificantlylowerwer than that of the sequence GGAGG, also identified as a conserved sequence in this subset of genes (E-value of ~10-15 ~10-15
The typical operator was identified as a palindromic sequence, -ATTGTTANNNNNNTAACAAT-.
The seismic activity that followed over the subsequent 51 hours can retrospectively be identified as a foreshock sequence.
It is identified as a mosaic sequence by 3SEQ (at the same breakpoint) and has a statistically-supported phylogenetic recombination signal in an ML tree constructed by RAxML [42], [43] (analysis not shown).
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