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The catalytic amino acids characteristic of the AGO proteins were identified aligning the PIWI domain sequences of M. truncatula and the known amino acid positions of A. thaliana AGO1 protein.
The HB BAC clones HB036I05, HB040O06, HB016P11 and HB001G02 from the HB171(13) BAC library (280,000 clones, average insert size 100 Kbp) were identified aligning the HB BES obtained as described in Hein et al. [ 38], against the sequence of the RH BAC clones.
Orthologous and paralogous R-genes were identified aligning Rice RefBank against Brachypodium, Sorghum and Maize using BLASTALL.
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Firstly, putative PF16 protein sequences from different species were identified, aligned and a tree constructed (Figure 4B).
To confirm homology of selected genes, conserved domain sequences were identified, aligned, and compared.
Mono- and dinucleotide repeats were identified, aligned using BLAST, and screened for variability.
Peaks in the 1D spectra were identified, aligned, and quantified by "targeted profiling" algorithms (Weljie et al., 2006) within the software Chenomix NMR Suite 4.5 (Chenomix, Inc).
Thus, zPicture identifies aligned regions independent of their location and orientation in the second sequence and maps these regions onto the reference sequence.
The shared sequence identifies aligned columns between the two MSAs and reflects the curator's assertion of how the sub-family should be mapped to its parent.
The CP subtypes identified align with those found in prosopagnosia caused by cortical lesions; they can be interpreted with respect to a hierarchical neural system for face perception.
Rather, it is due to a failure of the institutions to carry out their fiduciary duties to identify, align and manage equities in the best interests of their beneficiaries.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com