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For example, under the circumstance that both the proteon (or gene) tree and the genome dendogram are identical with identical branch lengths along all branches, φ will be 1 and k will be 1/S'.
Our previous simulations were conducted using identical branch lengths for all branches in the tree, which is an unrealistic situation.
Consensus phylogenies from three partitioned Bayesian analyses of sequence data all had identical topologies and almost identical branch lengths.
These simulations differ from the 4-taxon simulations of identical branch length in two ways: (1) there are twice as many taxa in the dataset, and (2) branches are positioned at three different depths in the tree (two of which have multiple samples).
Seven phylograms independently created with the PKD1 master genes of orangutan and rhesus macaque together with one pair of orthologous PKD1 loci from human and chimpanzee showed for all PKD1 loci, with the exception of human PKD1P3, almost identical branch lengths (expected number of nucleotide substitutions/site) of 0.020 0.027.
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For the models with identical substitution rate, we simply fix the branch length ratio c at 1 across partitions.
On the other hand, proteins in those branches must be structurally very similar or identical.
According to structural features of the parallel mechanism, identical branches connect the end effector with the base.
For the parallel manipulator, the base and the end effector are connected with multiple identical branches simultaneously.
Both phases are then correlated in identical branches with several closely delayed versions (for GPS; early, prompt, and late), of the locally generated PRN code [1].
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