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The SNP information (protein accession number (NP), mRNA accession number (NM), and SNP ID) was retrieved from dbSNP [ 39] and UniProt databases [ 40].
For each Protein ID the corresponding Nucleotide ID was retrieved from UCSC genome database (genome releases hg19 and mm9), along with its exon annotation.
In the absence of the household card, the census ID was retrieved from the computerized census database using the patient's name and other identifiers.
If no Genoscope ID was found for the query sequence, a Tentative Consensus (TC) ID was retrieved from VVGI5 database (http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl gudb=grape).edu/tgi/cgi-bin/tgi/gimain.pl gudb=grape
The gene ID was retrieved from studies already published [[ 56]-[ 62]] for each member responsible for this physiological biosynthetic pathway, while cDNA sequences were in silico retrieved from the NCBI database (http://www.ncbi.nlm.nih.gov/).nih.gov/
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If a Job ID is retrieved without any nodes selected, a new network is created.
The ASD-ID was retrieved from69.
The mapping of Ensembl IDs to Affymetrix probe set IDs was retrieved from mapping files provided by Affymetrix (http://www.affymetrix.com/estore/).
The retrieved sequences were further validated by analyzing the annealing of primers used in the respective studies using Primer-BLAST (http://www.ncbi.nlm.nih.gov/tools/primer-blast/). The microarray probeset ids were retrieved using Rice Oligonucleotide Array Database (http://ricearray.org/; Jung et al. 2008).
Gene symbols of transcript IDs were retrieved using DAVID [ 16].
GO-terms, INTERPROs and Kegg IDs were retrieved using Blast2GO [ 146].
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CEO of Professional Science Editing for Scientists @ prosciediting.com