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The 108 target genes were mapped to their corresponding uniprot ids using ID mapping tool available at http://www.uniprot.org[ 142].
Entries were first mapped to UniProtKB accessions using the ID mapping service [34] followed by sequence mapping.
Corresponding UniProt Accession Name (Uniprot_AC) was obtained for each mapped Entrez Gene ID between the species using the ID mapping file for each organism from 1.
Batch searching allows for direct chemical identifier (ID) mapping and downloading of multiple data streams in several different formats.
For functional interpretation of the data, we then map the gene and protein data based on identifier (ID) mapping or if necessary using peptide or sequence mapping to proteins in our data warehouse described below.
generated gene ID mapping files and assigned gene identification.
UniProtKB protein amino acid position and ID mapping is done using SNVDis and ID Mapping services (24, 40).
The ID mapping process was successful at finding accessions for most (99.5%) BIND interactors.
(This updated ID mapping is available at the Array Annotation link on AgBase).
ATH1 probe set-to-Locus ID mapping was obtained from TAIR, March 31st 2007 [ 78, 79].
The conversion, specifically the ID mapping, will be maintained over time.
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