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The distribution of each random component ( O i ∣ x i ) in the sequence ( O N ∣ x N ) is the same for each type of data X, and consequently, μi, x(s ; H j )=μ x (s ; H j ), i.e., μi, x(s ; H j ) is independent from i for each type of data x.
Indeed, if our transition matrix ∏ depends on the position i in the sequence, we simply have to replace R in the algorithms with the corresponding R i (which may use a significant amount of additional memory depending on its expression as a function of i).
The new descriptors of evolutionary information can be defined as follows: (1) : The mean and standard deviation of the H feature values for each residue a i in the sequence p. Hydrophobicity (H) is a key factor in amino acid side chain packing and protein folding.
A profile profile similarity score between a query sequence segment and a structural fragment is calculated using a distance function called City Block Metric (CBM): (1) where ℓ is the fragment length, S aa, i) and X(aa, i) are the frequencies of amino acid aa at position i in the sequence segment and in the structural fragment, respectively.
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Here, we report reversible photoswitching of the helix content in short peptides containing an azobenzene cross-linker between cysteine residues at positions i, i + 4, or i, i + 11 in the sequence.
Energy drink, exclusive nightclub, spas, refugee camps, containers, Kettering … I'll let you know when I guess the next one in the sequence.
The parameter k is the least common multiple of the m-periodic nodes while i indicates the bit in the sequence.
In case two positions, i, j in the sequence are incompatible then we have w(i j)=− ∞.
The decimated sequence then is this sequence, collapsed as I show in the sequence above.
The present study was conducted to investigate in situ expressions of PGI, PGII and PGI/II ratio in the sequence of NOR- > GS- > GA- > GC.
Furthermore, multilocus sequence typing classified 97 of 98 members of the pulse type I in the same sequence type (ST), ST-7.
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CEO of Professional Science Editing for Scientists @ prosciediting.com