Exact(6)
With | S| we denote the length of sequence S. S[ i] indicates the nucleotide at position i in sequence S.
i) In sequence depth, Oncorhynchus mykiss and Poecilia reticulate, which sequenced more reads, Oncorhynchus mykiss and Poecilia reticulate produced longer contigs than C. semilaevis.
The sequence identity is defined over a set of aligned sequences (in our case, all sequences have the same length and can be trivially aligned) as follows: (7) where s i is the nucleotide at position i in sequence s.
For each position we determined whether the condition was true, where the predicate E(X i, Y j ) is defined as meaning position i in sequence X is aligned to position j in sequence Y.
Maeu-UP is located within the MHC on chromosome 2 and is the most similar MHC-linked class I in sequence identity to the MHC un-linked class I genes.
Here, b * is the total size of all sets MS (M i ) and b j, i =| MS (S j, M i )|, where MS (S j, M i ) is the set of all PSSM matches of PSSM M i in sequence S j.
Similar(54)
A shustring of sequence Q starting at position 1 ≤ i ≤ 2ℓ Q is the shortest substring that differs from substrings starting at any position 1 ≤ i′ ≤ 2ℓ s in S. We denote the lengths of shustrings starting at positions i, i′ in sequences Q, S by X ˜ i, i ′.
All management directors, except for one in sequence I and two in sequence II participated in the study.
As we were eating from the same platter, Wong and I dipped in sequence.
This can be written as (3) where δ ni denotes the number of times amino acid i occurs in sequence n.
As explained in Section 2.2, kmacs searches for each position i in one sequence the maximum substring starting at i that matches a substring in the second sequence.
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