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If fluorescence was combined with either BDA or HRP, patterns were analyzed in alternate series of sections.
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One was called "High Rate Pond" (HRP) design, developed at UC Berkley.
Digital images of the BDA- and HRP-labeling patterns in histological sections were obtained by scanning the sections at 2400 dpi using an Epson 4990 scanner.
In order to pattern active HRP, except for active HRP micropatterns predesigned other regions on a HRP-immobilized substrate was deactivated by a reactive species generated at the electrode as the tip of SECM held at 1.7 V through oxidation of Br− in 0.20 mol/L phosphate buffer (PB) containing 2.5 × 10−2 mol/L KBr and 2.0 × 10−3 mol/L BQ (pH 7.0).
Gong-You Chen from Shanghai Jiao Tong University provided a comprehensive picture of the complex regulatory patterns of the hrp regulon in Xanthomonas pathogens that infect rice.
Figure 3 HRP vs. TIP Plot: March, 2004. Figure 4 HRP vs. TIP Plot: July, 2004. Figure 5 HRP vs. TIP Plot: November, 2004. Figure 6 HRP vs. TIP Plot: February, 2005.
To illustrate the patterns of callosal connections labeled with HRP or striate projections resulting from restricted injections of HRP or BDA, thresholded versions of these patterns were prepared after first applying a median filter to reduce noise, followed by a high-pass filter to remove gradual changes in staining density across the entire digital image.
In contrast to the HRP-dendrimer and HRP-MB-dendrimer systems, which demonstrated very close bioelectrocatalytic patterns, multicofactor SOx wired to MB-dendrimer showed a bioelectrocatalysis superior to that based on direct ET reaction.
This pattern matches very well the observed pattern of expression and expression patterns of the genes of the hrp regulon and would be quite unlikely to occur from the model by chance, given the potential state space.
Similarly, in control NMJs, Sdc exhibited a halo-like expression pattern surrounding HRP-marked synaptic boutons (Fig. 1C).
Probing phases with anti-HRP further corroborates the presence of post-Golgi glycosylation patterns in the final preparation (Additional File 1, panel C).
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