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For COI sequences, species-level taxonomic identities were assigned to blood meals when a host sequence was >97% similar to a sequence referenced in the database.
We attributed 28S ribosomal RNA sequences to Annelida if the most similar reference sequence to an unambiguous high-quality host sequence was derived from an annelid species.
Predictions are reported for each population with the type of signal (blastn, CRISPR, tetranucleotide composition), the host sequence used, and the strength of the prediction.
The information theory community has been studying performance limits of such models in which random parameters capture fading in a wireless environment, interference from other users [6], or the host sequence in IE and date hiding applications [1 4, 7].
Sequencing RNA directly from specimens without enriching for virus nucleic acids results in high proportions of host sequence reads.
The capability to detect candidate infectious agents in a human sequencing library was evaluated using spiked-in RNA virus and computational host sequence subtraction.
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Jahner, D. & Jaenisch, R. Retrovirus-induced de novo methylation of flanking host sequences correlates with gene inactivity.
Sequence data generated by this study have been deposited in the National Center for Biotechnology Information GenBank database (Accession Numbers MH384533-MH384601 for annelid host sequences and Accession Numbers MH384497-MH384532 for vertebrate hosts).
Additional viral and host sequences from a range related taxa are needed to clarify this point.
Some of the TEs capture host sequences of cellular genes and form new open reading frames.
Secondly, we took advantage of the most recent release of the P. infestans genome to separate pathogen from host sequences.
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