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The entire dataset was first clustered at the 90% homology level (k = 5), followed by clustering at the 60% homology level (k = 4), and a final clustering step at the 30% homology level (-ce 1e-6).
In parallel, there are samples with high protein homology level which are collected from stations belonging to the same bioclimate.
The homology level of clone with uncultured clones ranged 84 87 % at the amino acid level (Table 2).
Alignment of the C-terminal sequences of Delta and Beta toxins shows that the 66 C-terminal residues exhibit the lowest homology level (18% identity versus 42% for the whole sequences).
They were found on protein homology level within the envisaged ZRE rich or poor clades.
Strains grouped in each cluster showed a diversity (distance level) of less than 10% (or homology level >90%).
Similar(42)
In addition, significant homology levels, generally ≥80%, were observed in several coagulase-negative staphylococcal species such as S. haemolyticus, S. epidermidis or S. saprophyticus (Table S1).
Moreover, the general features of locus structure and the average homology levels with Arabidopsis genes were distinctively different among the locus types.
While alignment of human BORIS isoforms with the mouse genomic locus uncovered several putative mouse BORIS carboxy-termini (C95, C90, C35, and C34), the homology levels were rather low, ranging from 9% to 42%.
The Selenomonas group is phylogenetically coherent with interspecies homology levels of 90to99%90to99%
These results indicated that homology levels of most isolates were within species thresholds (ompA ≥98.8% and ompB ≥99.2%) (9 ).
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