Sentence examples for hit assignment from inspiring English sources

MetAnnotate provides two separate taxonomic assignment methods: best hit assignment as well as phylogenetic placement onto reference trees that are uploaded or computed on the fly.

Using KAAS, each olive EST was assigned with a KEGG orthology (KO) number with the SBH (single-directional best hit) assignment method and the numbers subsequently were mapped to one of the KEGG's reference metabolic pathways.

The Kyoto Encyclopedia of Genes and Genomes (KEGG) function annotation [ 41] of the thus identified encoded proteins was performed using KEGG Automatic Annotation Server (KAAS; http://www.genome.jp/tools/kaas/) [ 56] using a default gene-set derived from 25 genomes with 15 additional bacterial genomes (Additional file 3: Table S6), based on a bi-directional best hit assignment method.

However, MOTHUR uses a simple best-hit assignment strategy that assigns all reads to the leaves of the NCBI taxonomy, regardless of the presence of other, equally similar reference sequences.

He wanted to prepare for a possible pinch-hitting assignment.

Because this ambiguity cannot be resolved in principle, the commonly used best-hit assignment easily results in many spurious predictions.

Merging hits with identical descriptions irrespective of the hits' taxon assignment resulted in 6,323 unigenes in C. piger and 5,705 unigenes in C. riparius with an overlap of 4,738 genes.

Further, the coding sequences were processed for functional annotation using the bi-directional best-hit (BBH) assignment method on KEGG Automatic Annotation Server (KAAS) [ 62].

Even for strong BLAST hits, such assignments should be made with caution and are ultimately dependent on the quality of the query and subject sequences.

In pulp and seed tissues transcript abundance in most functional categories declined in water-deficit stressed vines relative to well-watered vines with transcripts for storage proteins and novel (no-hit) functional assignments being over represented.

Downstream analyses such as motif scanning, overrepresentation analysis and motif hit score cutoff assignment as described in (Down et al., 2007) are also possible.