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Also, two proteins with the same structure and/or function in our data are typically highly divergent, with a median amino acid divergence of no less than 55 percent (Figure S2a and S2b).
This short protein is only 98 99 residues long, and is highly divergent, with 69.6% and 66.6% sequence identity of the koala sequence with the wallaby and devil sequences respectively.
By contrast, the genus Anteholosticha appears to be heterogeneous and highly divergent, with species falling into different clades in all our trees (Fig. 2 4).
LSU-Lb, the flea-associated strains are highly divergent, with str.
Consistent with previous findings [ 84], plant CaMKs are highly divergent with yeast and human proteins.
The sequences were highly divergent with 133 polymorphic nucleotides, representing 60% (133/221) of the sites.
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In this analysis we find that the soybean genome is a mosaic of these two models with a range of conservation spanning from gene for gene retention [ 25] to moderately conserved regions with 25 to 50% gene retention [ 8] and highly divergent regions with a single gene conserved.
To better reflect selective pressure on nucleotide variants, non-synonymous SNPs were further identified from the highly divergent SNPs with top 1% F ST values, and the corresponding genes containing these non-synonymous SNPs were determined.
Plesiastrea is highly divergent, but with no consistently identified close relatives (group XIV in Fig. 1D, group XIV-b in Figs. 2A, 3).
A significant portion of the polymorphism observed in gki can be attributed to gki12, a highly divergent allele with greater similarity to GAS gki alleles than to SDSE alleles (Figure S1); when the divergent gki12 allele is removed from the analysis, the nucleotide diversity of gki falls from 0.021 to 0.012, and the percentage of polymorphic sites drops from 10.1 to 5.4 (n = 27).
In spite of their conserved seven-transmembrane (7-TM) architecture, heptahelic receptors make up a highly divergent family, with members within each family sharing only 25% amino acid sequence identity in the conserved transmembrane core region, while among different families little sequence similarity is shared [16].
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