The highlighting expression data paragraph is interesting, but including a biological example would help potential biologist users know how to use the software for a particular analysis.
RNA species were clustered in various patterns of expression highlighting genes with altered expression in one or more of the cell strains, including metabolic enzymes and transcription factors.
This chapter provides a framework for the utilization of R. sphaeroides as a model organism for membrane protein expression, highlighting key advantages and shortcomings.
We identified 80 high-level DNA amplifications and 13 multi-copy deletions, and the resident genes with concomitantly altered gene-expression, highlighting known and novel candidate breast cancer genes.
(C ) Double FISH of zpuf-6 and AGAT-1 highlighting zpuf-6 expression in discrete cells in the planarian epidermis (Top panel, white arrowheads).
The analysis of genomic expression during human myelopoiesis using an integrative computational approach allowed discovering important relationships between genomic position, biological function and expression patterns and highlighting chromatin domains, including genes with coordinated expression and lineage-specific functions.
(A) MA plot highlighting significantly altered mRNA expression of adipose-derived factors in PWAT of HFD-IF mice, compared to that of HFD-AL mice.
Color coding also works for highlighting proteins that show elevated expression levels at certain points in a time course experiment.
The analysis of the GeneOntology terms therefore validated and broadened our interpretation of expression clusters by highlighting enriched functions that are consistent with known sequential events during male gametogenesis.
To this end, we overlaid expression data with the heatmaps produced by tMeV. Figure 4 displays the results for each gene expression phase by highlighting results from the initial phase in the left column, the persistent phase in the middle column and the latent phase in the right column.
In addition, we have previously shown that the inclusion of normal hematopoietic cells can improve the interpretation of gene expression patterns in leukemia [ 10], by highlighting genes that display a shared or unique expression pattern in the various normal hematopoietic cells and the different genetic subtypes of leukemia.
