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Exact(5)
The APP values of the edge symbol a are obtained from step 2. Thus, instead of searching over all the 26 = 64 possible values of symbol a, we only limit the search to the N m = 8 values of symbol a yielding the highest APP values (thus 8 highest likelihood values).
We performed 500 runs of the Gibbs sampling algorithm using the training set, and retained the 50 runs having reached the highest likelihood values.
The highest likelihood values and the mode of the distribution of the ΔK index were all observed for K = 2, significantly higher than other clusters.
At 24 hours, the clinical findings with the highest likelihood values to predict poor outcome were absent pupil response or absent corneal response, with each result indicating that poor outcome was 10 times more likely.
The estimated IM parameters are presented in additional file 4. Using all four genes, the split between the two groups of populations showed the highest likelihood values at divergence times of around 1-2 Mya.
Similar(55)
The tree was the highest likelihood value was used for subsequent analyses.
Posterior distributions for the parameters were plotted and the mode of the posterior distribution was selected as the best estimate with the exception of the parameter T, where the point with the highest likelihood value was used.
The ML tree constructed with the WAG matrix was associated with the highest likelihood value.
The plot shown for each value of K is based on the run with the highest likelihood value.
For each K value, only runs that obtained the highest likelihood value were taken into account for further analyses.
The final search on the same matrix following the bootstrap search yielded the highest likelihood value: -42358.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com