Sentence examples for highest likelihood tree from inspiring English sources

Our highest likelihood tree has protosteloid clades as sister to the myxogastrids and dictyostelids.

There is no discrete clade of Amoebozoa that exclusively contains all the fruiting species we included in our taxon sample in our highest likelihood tree (Figure 3).

There is an essentially unsupported clade that occurs in our highest likelihood tree that includes most of the protosteloid species thought to be Eumycetozoa by Spiegel [2].

For the same reason, we also remain skeptical about the sister group relationship with Protostelium that we recovered with low support in our highest likelihood tree (Figure 3).

A single optimum ML tree was inferred in PAUP* while the highest likelihood tree was identified from 300 RAxML and 300 GARLI runs each starting from a different parsimony tree.

Over the 105 possible tree topologies among the five lineages, 34 trees were not significantly worse than the highest likelihood tree at the 5% confidence level (0.46<P<1; Table S4).

However, E. zonatum and isolate LHI05 show no close relationship in our highest likelihood trees, though a possible sister group relationship of LHI05 and E. zonatum, embedded within the acanthamoebids was not rejected by the AU test (Table 1).

In the protosteliid clade, while Planoprotostelium aurantium is nestled within the protosteliid clade in all of our highest likelihood trees, it cannot be rejected as sister to Protostelium (Table 2).

Bayesian methods, such as BEAST [ 55] and multidivtime [ 20] may also be affected; BEAST and MrBayes share the underlying core MCMC algorithm, which is used to identify high likelihood trees [ 55].

In a first approximation, the TBL of the highest-likelihood tree is a reasonable descriptor of the evolutionary rate of a given exon.

In addition, the quality of the highest-likelihood tree was also measured through its treeness, i.e., the relative contribution of the sum of internal branches to the TBL [ 31].