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Combining all seven WRKY loci yielded the most fully resolved trees and the highest bootstrap support (Fig. 1), both with MP and ML (the second, under-lined BP value between parentheses in the following discussion is that for ML).
Support for the monophyly of Macroglossinae came predominantly from CAD, as it provided the highest bootstrap support when analyzed alone, and bootstrap dropped from 91% to 49% when it was excluded (Table 1).
We find highest bootstrap support instead for an alternative scenario, the terrestrial Dorylaimia being part of a basal split.
From the resulting global dataset of orthology matches between the spotted gar and human genomes, the best spotted gar matches (highest bootstrap support) for each human gene prediction used in this study were mined.
Of the three measures used to estimate genetic distances – DA, DC and proportion-of-shared-alleles – DC received the highest bootstrap support in Neighbour Joining (NJ) trees (Fig. 2).
The maximum likelihood tree based on amino acids for all coding genes showed no well supported clades (the highest bootstrap support value was 65%, data not shown), though the samples tended to cluster similarly as in the nucleotide-based trees.
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Phylogenetic analyses using these sequences showed that the NYJ strain forms a distinct branch with high bootstrap support.
According to the combined data set phylogeny, the isolates of each species formed clusters with a high bootstrap support.
Phylogenetic analysis of these near full-length genome sequences revealed that all genotype 5 sequences formed a close cluster with high bootstrap support.
Many branches received high bootstrap support with the unweighted data.
We decompose the taxa based on partitions with both strong biological support and high bootstrap support.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com