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Furthemore, the amounts of these contaminants needed to cause changes to the strip far exceed the highest acceptable values for drinking water.
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Yes = significant result with p-value ≤0.05 (where P is the highest acceptable probability value of recombination occurrence).
The highest acceptable p-value for all methods was set at a conservative value of 0.10, with a Bonferroni correction for multiple comparisons and a window size of 30 variable nucleotides for all approaches except BootScan.
To test B. lusitaniae sequences, the general settings were as follows: the highest acceptable P-value was set to 0.05 with Bonferroni corrections.
The highest acceptable P-value is set to 0.05.
The highest acceptable p-value was 0.05 (unless Bonferroni corrected).
The highest acceptable P value cut-off was set to 0.01.
The highest acceptable P-value cut-off was set to 0.001 and 1000 permutation were generated.
There was no evidence for recombination occurring at either MHC locus, even when using a very conservative cutoff for the highest acceptable p-value (p = 0.10) and small window sizes.
Following the author's recommendation, the default parameters of the computer program Geneconv (Version 1.81) [ 46] were used, which include the highest acceptable P value of 0.05, Bonferroni correction for multiple comparisons, scanning sequence pairs, and a permutation of 10,000.
To minimize the false-positive error rate, the highest acceptable P value for inferring recombination events was set at 0.000005 with a window size of 20 nucleotides, and only those breakpoints that were identified using at least four methods were considered valid.
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