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However, we find from our simulation only weak (or no) indications that the pairs that actually did reproduce would get offspring with higher expected heterozygosity than if mating was random.
Two base AT-rich motif markers also displayed higher expected heterozygosity.
Low-elevation sites had higher expected heterozygosity (He = 0.65) than mid- and high-elevation sites (He = 0.57 and 0.55).
Edea et al. [ 20] reported a 0.1 higher expected heterozygosity for Hanwoo cattle which might be a result of differing quality control filtering criteria or the use of a lower density genotyping platform, resulting in different estimates of heterozygosity.
Suh et al. [ 16] found higher expected heterozygosity levels for brown Hanwoo and Chikso, however, their study was based on 30 microsatellite markers which present a different data basis.
Interestingly, XXL represented more haplotypes, higher AR, and higher expected heterozygosity at MHC class I genes than those in the larger mountain populations, i.e., MSH, QLA, and QLI (Table 1).
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Berwaerts et al. [11] on the other hand obtained very high expected heterozygosity estimates with only two loci for the esterase enzyme (for which we were unable to obtain clear banding patterns).
Genetic markers with high expected heterozygosity are informative and therefore useful in individual assignment analysis [ 33].
But the ascertainment bias reversed when heterozygosity was measured using only the 16 selected SNPs: coyotes appeared to be the most genetically diverse, with northeastern coyotes having a very high expected heterozygosity, whereas dogs appeared the least genetically diverse (Table 3).
The levels of the genetic diversity estimators measured within these geographic groups differed: Iran and Turkey groups (region A), had the highest expected heterozygosity values, with 0.655 and 0.630, respectively; while the Oases of Tunisia and Draa Valley groups (region C) had the lowest ones, with 0.487 and 0.474, respectively.
The microsatellites generally exhibited high levels of heterozygosity and, except for loci Cma10EPA, Cma11EPA and SP251, observed heterozygosity was not-significantly higher than expected heterozygosity.
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