Sentence examples for high-quality variations from inspiring English sources

Here, high-quality variations were applied in both analyses.

a Population structure clustering using the high-quality variations with an optimal K value of 4. b Validation of structure clustering using ADMIXTURE software.

High-quality variations were called when four reads, each with at least 20 base pairs flanking the polymorphic site, contain the difference, with at least one read in each direction.

We intend to continue including other sources of high-quality variation data based on user requests.

However, after excluding missing genotypes with MAF (Minor Allele Frequency) ≥ 0.01, high-quality (HQ) variations were dramatically decreased to 242, including 227 SNPs (93.8 % of the total HQ variations) and 15 indels (6.2%% of the total HQ variations) with a variation density of 1.8 per 1 kb (Table 1).

We mapped the reads from each nematode back to the draft assembly and identified only 32,729 high-quality single-nucleotide variations, a very low per-nucleotide diversity rate of 0.04%.

The Ensembl and Ensembl Genomes BioMarts provide a point of access to the high-quality gene annotation, variation data, functional and regulatory annotation and evolutionary relationships from genomes spanning the taxonomic space.

The heatmaps of "average QV of the reads" provide supportive information to quality evaluation by "proportion of low-quality reads", in which quality scores of high-quality reads and their variations are not considered and represented in the heatmap.

There was a general paucity of high-quality data and significant variation in both practice and technology used among studies, which confounded analysis.

Variations were considered as high-quality differences when either (1) the variation was sequenced in at least three nonduplicate reads including at least one forward and one reverse read, or (2) the variation was seen in at least five reads with quality scores greater than 20.

In contrast, the proposed key frame quality control (Figure 9) allows reaching a rather smooth and stable PSNR quality with small variations, apart from some few higher quality local variations, notably at scene changes.