One of the 12 SNPs with high linkage disequilibrium (LD) at 11.6 Mb region (1 11608731) is 26Kb away from the right marker of qK1.11.
Obviously, small P-values indicate high linkage disequilibrium.
Both measures confirm that all five SNPs are in high linkage disequilibrium (LD).
The haplotype is contained within known region of high linkage disequilibrium in Bos taurus cattle.
The DLA class II genes are in high linkage disequilibrium (LD).
None of the SNPs in the same high linkage-disequilibrium bin as rs10793832 (according to the Pelegen genome browser) were in high linkage disequilibrium with rs1433050, the FBXL17 SNP identified in this study.
SNPs rs840869 and rs859024 are "tag-SNPs" representing a region of chromosomal DNA with high linkage disequilibrium.
All analyses were performed after deleting the MHC region on chromosome 6 since regions of high linkage disequilibrium can overly influence PCA results.
However, haplotype analysis showed the four SNPs to be in very high linkage disequilibrium (LD) for both maternal and fetal samples (Table S2).
The significantly associated SNPs in both regions were observed within single blocks of high linkage disequilibrium (LD) that were bounded by recombination hotspots.
rs4955720 could be in high linkage disequilibrium (LD) with another SNP that directly affects the transcription and/or function of PRKCI.
