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Amino acid sequence analysis showed high identity within species and close relation to the PRNP of sika deer, sheep, dog, camel, cow, mink, rabbit and hamster with 83.1 99.7% identity.
Many S. barkhanus sequences show high identity within the dataset.
Different strains of O. ophiodiicola shared high identity within the IGS, but intraspecific variation was observed at numerous SNPs throughout the regions sequenced.
Multiple sequence alignment between the oyster putative neuropeptide precursors with previously identified homolog sequences in mollusc confirms high identity within the bioactive peptide sequences and variability outside these regions.
For some of these IGRs, the large number of BLAST hits is the result of many different short aligned sections of high identity within the IGR (e.g. the IGR between SAR11_0641 and SAR11_0642).
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A BLAST search did not result in high identity hits within the National Center for Biotechnology Information (NCBI) database or against its own genome.
Nonetheless, another plausible explanation for the high identity of the regions within the IRB is that they might have been duplicated recently in evolution; it could also be possible that they are undergoing frequent gene conversion.
While individual enzymes within each group (AAADs, SDCs, and GDCs) maintain high identity (typically greater than 50%), enzymes between these related groups maintain significantly reduced identity (typically lower than 15%).
Several other scaffolds within the O157 SvETEC accessory genome also aligned with high identity to these plasmids.
Percent identity within anole class I sequences ranges from 70.6% to 86.4%, and ADH1A and ADH1B show the highest identity with uromastyx (spiny-tailed lizard) ADH1A (90.4%) and ADH1B (85.0%), respectively.
Intron sequences sharing high nucleotide identity within the same insertion locus maintained similar secondary structure (data not shown).
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