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Furthermore, the RPN has high duplication rates and does not consider ordered weight rules.
We did not encounter such patterns in any of the genes presented here, though it is the case that Pap3 and the yellows belong to families known to have high duplication rates.
Still, all the libraries show a considerably high duplication rate.
This mechanism could be responsible for the high duplication rate of some multigenic families.
First, searches of the trace server archives failed to find additional sequences whose high duplication content confounds assembly.
This suggests that the enlargement of several ABC transporter families in T. thermophila resulted from relatively a high duplication rate.
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It showed that Tetrahymena pyriformis had the highest duplication rate (4.13 time/day) in both types of cultures (pure and mixed), followed by Paramecium caudatum and Halteria grandinella, respectively.
To account for this higher duplication in soybean, we increased this number to 35.
Compared with vertebrates, eye-genes showed higher duplication rates in pancrustaceans when normalized by total gene duplications.
Similarly, higher duplication times in the four species were also found in lineage-specific expansions and complex expansions.
Possibly, the conserved protein sequence might be also related to the higher duplication rate of the genes expressed in CNS.
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