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A good clustering algorithm can present high accuracy of assignment.
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With respect to correctness of the assignment, results indicate higher accuracy of LCA.
The closeness of those estimations will inevitably increase the overall accuracy of assignment for DE and lead directly to the higher AUC values.
Therefore, our clustering algorithm can improve the efficiency and accuracy of assignment for k-anonymization.
Evaluate accuracy of assignment (true or false).
Overall accuracy of assignment to subfamily was 0.90 using the "liberal" and 0.84 using the "strict" criterion with "best match" having the highest overall accuracy for this taxonomic level (0.92).
Overall accuracy of assignment to tribe was 0.75 using the "liberal" and 0.66 using the "strict" criterion.
The overall accuracy of assignment to genus was 0.83 using the "liberal" and 0.75 using the "strict" criterion.
The compounds were detected as intact molecules with a cation adduct and assignments of CHC elemental composition were made on the basis of high accuracy measurement of the mass to charge ratio.
The companion UVPD mass spectra allow confident structural assignments, especially given the high accuracy measurements of the molecular ions and fragment ions (mass errors less than 5 ppm).
We set m = 0.8 if the template domain is assigned by DomainParser, and m = 1.0 if by CATH, as the latter is assisted by human intervention and of a higher accuracy in domain assignment.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com