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Other groups have undergone recombination, e.g., AMC26, AMC24 and AER39.
A single regulatory CDS (SSUBM407_0840) is found in the loci that appear to have undergone recombination.
Maximum likelihood methods of codon substitution may suffer from high rates of false positives when the sequences being analyzed have undergone recombination [47], [48].
The divergence time of O157 H7 and O55:H7 was calculated based on the number of mutational changes, by excluding regions that have undergone recombination.
For the segments that have undergone recombination, we have no knowledge of the donor strain, so cannot use such information to identify the incoming sequence.
The number of trees inferred by a method when the sequences have undergone recombination should ideally be positively correlated with the number of simulated trees.
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We executed a dose response study to determine the number of neurons that had undergone recombination in response to tamoxifen administered at doses ranging from 50 to 500 mg/kg.
The aligned regions were then analyzed to identify regions that had undergone recombination.
Less than 1% of thymocytes in Ox40-cre/YFP mice had undergone recombination, and the majority of these were CD4+CD8− single-positive cells (Figure 1A).
Single base change mutational and multi bases change recombinational events could be distinguished, and this showed that there has been extensive recombination, with 8 of the 26 genes having undergone recombination in either 6th or 7th pandemic lineage since divergence.
98% of peripheral T cells that had undergone recombination and become YFP+ in such mice were CD4+ (Figure 1A), and among these one-third to one-half were FoxP3+ depending on age at the time of analysis.
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